recover_rows() recover_cols() get_rows() get_cols() as.matrix(<tbl_ord>) recover_inertia() recover_coord() get_coord() get_inertia() dim(<tbl_ord>)
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Access factors, coordinates, and metadata from ordination objects |
recover_aug_rows() recover_aug_cols() recover_aug_coord() augment_ord()
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Augment factors and coordinates of 'tbl_ord' objects |
tidy(<tbl_ord>) glance(<tbl_ord>) fortify(<tbl_ord>)
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Tidiers for 'tbl_ord' objects |
annotation
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Annotate factors of 'tbl_ord' objects |
get_negation() revert_negation() negate_ord() negate_to_first_orthant()
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Negation of ordination axes |
recover_conference() get_conference() revert_conference() confer_inertia()
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Confer inertia to factors of a 'tbl_ord' object |
recover_supp_rows() recover_supp_cols()
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Supplement 'tbl_ord' objects with new data |
as_tbl_ord() make_tbl_ord() is_tbl_ord() is.tbl_ord() valid_tbl_ord() un_tbl_ord()
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A unified ordination object class |
format(<tbl_ord>) print(<tbl_ord>)
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Format a tbl_ord for printing |
plot(<tbl_ord>)
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Plot and biplot methods for 'tbl_ord' objects |
pull_factor() pull_rows() pull_cols() rename_rows() rename_cols() select_rows() select_cols() mutate_rows() mutate_cols() transmute_rows() transmute_cols() cbind_rows() cbind_cols() left_join_rows() left_join_cols()
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dplyr verbs for tbl_ord factors |
ordinate()
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Fit an ordination model to a data object |
ggbiplot() ord_aes()
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Biplots following the grammar of graphics |
stat_rows() stat_cols()
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Render plot elements for one matrix of an ordination |
stat_center() stat_star()
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Compute geometric centers and spreads for ordination factors |
stat_chull()
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Restrict geometric data to boundary points for its convex hull |
stat_cone()
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Restrict geometric data to boundary points for its conical hull |
stat_scale()
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Multiply artificial coordinates by a scale factor |
stat_spantree()
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Calculate a minimum spanning tree among cases or variables |
geom_origin()
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Crosshairs or circle at the origin |
geom_unit_circle()
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Unit circle |
geom_axis()
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Axes through the origin |
geom_isoline()
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Isolines (contour lines) |
geom_lineranges() geom_pointranges()
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Intervals depicting ranges, usually about center points |
geom_text_radiate()
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Text radiating outward from the origin |
geom_vector()
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Vectors from the origin |
theme_biplot()
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Biplot theme |
draw_key_line() draw_key_crosslines() draw_key_crosspoint()
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Biplot key drawing functions |
ordr-ggproto GeomAxis GeomPointranges GeomLineranges GeomIsoline GeomOrigin GeomTextRadiate GeomUnitCircle GeomVector StatCenter StatStar StatChull StatCone StatRows StatCols StatScale StatRowsScale StatColsScale StatSpantree StatRowsEllipse StatColsEllipse StatRowsCenter StatColsCenter StatRowsStar StatColsStar StatRowsChull StatColsChull StatRowsCone StatColsCone StatRowsSpantree StatColsSpantree
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ggproto classes created and adapted for ordr |
geom_rows_point() geom_cols_point() geom_rows_path() geom_cols_path() geom_rows_polygon() geom_cols_polygon() geom_rows_text() geom_cols_text() geom_rows_label() geom_cols_label() geom_rows_text_repel() geom_cols_text_repel() geom_rows_label_repel() geom_cols_label_repel() geom_rows_axis() geom_cols_axis() geom_rows_lineranges() geom_cols_lineranges() geom_rows_pointranges() geom_cols_pointranges() geom_rows_isoline() geom_cols_isoline() geom_rows_text_radiate() geom_cols_text_radiate() geom_rows_vector() geom_cols_vector()
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Convenience geoms for row and column matrix factors |
stat_rows_ellipse() stat_cols_ellipse() stat_rows_center() stat_cols_center() stat_rows_star() stat_cols_star() stat_rows_chull() stat_cols_chull() stat_rows_cone() stat_cols_cone() stat_rows_scale() stat_cols_scale() stat_rows_spantree() stat_cols_spantree()
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Convenience stats for row and column matrix factors |